nf-core/demo
nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
demominimal-exampletrainingtutorial
Version history
Changed
- Template update for nf-core/tools v3.4.1 and v3.5.1: #49
- Update pipeline to meet requirements for Nextflow’s “strict syntax”: #50
- Updated nf-core modules and subworkflows
- Bump nf-schema and minimum Nextflow version
- Use topic channels for version handling
- Add mimetype to schema for
params.input
Fixed
- Fix all warnings from
nextflow lint
Dependencies
| Dependency | Old version | New version |
|---|---|---|
multiqc | 1.25.1 | 1.33 |
nextflow | 24.04.2 | 25.10.2 |
Credits
Special thanks to the following for their reviews and assistance:
New Contributors
- @ewels made their first contribution in https://github.com/nf-core/demo/pull/49
Full Changelog: https://github.com/nf-core/demo/compare/1.0.2…1.1.0
What’s Changed
- Master to dev by @christopher-hakkaart in https://github.com/nf-core/demo/pull/19
- Bump dev by @christopher-hakkaart in https://github.com/nf-core/demo/pull/18
- Important! Template update for nf-core/tools v3.1.0 by @nf-core-bot in https://github.com/nf-core/demo/pull/21
- Update to latest modules by @christopher-hakkaart in https://github.com/nf-core/demo/pull/23
- Bump version for release by @christopher-hakkaart in https://github.com/nf-core/demo/pull/27
- Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in https://github.com/nf-core/demo/pull/29
- updated nextflow_schema.json by @ShimiraOleg in https://github.com/nf-core/demo/pull/34
- Important! Template update for nf-core/tools v3.2.1 by @nf-core-bot in https://github.com/nf-core/demo/pull/36
- Minor fixes and template update by @christopher-hakkaart in https://github.com/nf-core/demo/pull/32
- Important! Template update for nf-core/tools v3.3.1 by @nf-core-bot in https://github.com/nf-core/demo/pull/38
- Remove -C from bach in nextflow.config by @maxulysse in https://github.com/nf-core/demo/pull/39
- PR to prepare for dev to master for release 1.0.2 by @FloWuenne in https://github.com/nf-core/demo/pull/40
- Dev to Master for release 1.0.2 by @FloWuenne in https://github.com/nf-core/demo/pull/42
New Contributors
- @ShimiraOleg made their first contribution in https://github.com/nf-core/demo/pull/34
- @maxulysse made their first contribution in https://github.com/nf-core/demo/pull/39
- @FloWuenne made their first contribution in https://github.com/nf-core/demo/pull/40
Full Changelog: https://github.com/nf-core/demo/compare/1.0.1…1.0.2
What’s Changed
- Fix test path by @christopher-hakkaart in https://github.com/nf-core/demo/pull/7
- Bump to 1.0.2dev by @mashehu in https://github.com/nf-core/demo/pull/13
- Manual-update to 3.0.2 by @mashehu in https://github.com/nf-core/demo/pull/14
- Add background to subway map by @mashehu in https://github.com/nf-core/demo/pull/15
- Release lint by @christopher-hakkaart in https://github.com/nf-core/demo/pull/16
- Template update and other small fixes by @christopher-hakkaart in https://github.com/nf-core/demo/pull/8
New Contributors
- @mashehu made their first contribution in https://github.com/nf-core/demo/pull/13
Full Changelog: https://github.com/nf-core/demo/compare/1.0.0…1.0.1
What’s Changed
- Important! Template update for nf-core/tools v2.14.1 by @nf-core-bot in https://github.com/nf-core/demo/pull/3
- Simplify pipeline by @christopher-hakkaart in https://github.com/nf-core/demo/pull/4
- Release of nf-core/demo by @christopher-hakkaart in https://github.com/nf-core/demo/pull/5
New Contributors
- @nf-core-bot made their first contribution in https://github.com/nf-core/demo/pull/3
- @christopher-hakkaart made their first contribution in https://github.com/nf-core/demo/pull/4
Full Changelog: https://github.com/nf-core/demo/commits/1.0.0
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