This project aims to enhance and optimize the nf-core/viralrecon pipeline by addressing key issues and improving functionality, with a focus on the 2.7 milestone.

We welcome contributors of all experience levels.

Goal

  1. Resolve codon merging issues to enhance sequence processing accuracy.
  2. Improve Nanopore data analysis for better long-read handling.
  3. Optimize MultiQC reporting to provide clearer and more comprehensive pipeline metrics.
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