This project aims to build upon and update the nf-core/lncpipe pipeline, originally designed for the analysis of long non-coding RNAs (lncRNAs). While development has slowed down, we aim to modernize the pipeline and bring it to the current nf-core and Nextflow pipeline standards, improve its usability, and demonstrate its relevance for the scientific community.
We welcome contributors of all experience levels.
Goals
-
Expand documentation and user support to encourage wider adoption.
A great entry point for first-time contributors—help make the pipeline more accessible!
-
Update the pipeline to the latest nf-core and Nextflow standards.
Perfect for those who enjoy working with Nextflow and want to contribute to pipeline modernization.
-
Improve compatibility with current reference genome annotations and transcriptomic datasets.
A great challenge for contributors familiar with RNA-seq data and bioinformatics workflows.
-
Optimize integration with existing RNA-seq pipelines for seamless lncRNA analysis.
Ideal for those with some experience in workflow development and RNA sequencing analysis.
Join us in improving lncpipe and making lncRNA analysis more accessible!
